About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197030120_197030906_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197030120 - 197030906
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
ATTTCCCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TGTTCACTATTT
Flanking Amino Acid:
RWLGDLILSKSCENAIVCWK
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
79.4
0.66
0.8
71
35.3
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
48.6
-0
2.1
74.99
41.5

Associated Gene:

Gene:
EED
Ensembl Gene ID:
ENSAPLG00000012886
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013496
197016482 - 197032741
16260