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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197044570_197046293_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
197044570 - 197046293
Intron Length:
1724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGAAA
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTTTTTTGATT
Flanking Amino Acid:
AFIPANVVLKWYENFQRRLT
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
69.3
36.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88
0.85
0.7
81.7
35.4
Minor 5ss
37.8
-1.4
3.1
44.4
45.6
Minor BPS
66.5
0.6
1.1
75.74
35.5

Associated Gene:

Gene:
HIKESHI
Ensembl Gene ID:
ENSAPLG00000018234
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034138
197042222 - 197053096
10875