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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197046413_197047346_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197046413 - 197047346
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
AAAAACTTACTT
Flanking Amino Acid:
AVSSVDSFTEFTQKMLDNFY
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63
43.8
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
42.2
-0.9
3.1
55.4
48.8
Minor BPS
48
-0
1.8
62.61
41

Associated Gene:

Gene:
HIKESHI
Ensembl Gene ID:
ENSAPLG00000018234
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034138
197042222 - 197053096
10875