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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197051574_197052435_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197051574 - 197052435
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
TTGTTCCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGTTCCTTATAG
Flanking Amino Acid:
MFGCLVAGRLVQAAPQQVAE
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.6
40
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
82.2
0.73
0.8
77.3
31.6
Minor 5ss
27.3
-2.6
3
30.8
36.9
Minor BPS
63.4
0.28
1.8
69.79
43

Associated Gene:

Gene:
HIKESHI
Ensembl Gene ID:
ENSAPLG00000018234
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034138
197042222 - 197053096
10875