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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197156617_197162854_F

Intron Information:

Intron Rank:
123422
Intron Class:
major
Intron Phase:
Intron Coordinates:
197156617 - 197162854
Intron Length:
6238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
GTGTTCTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
81.1
0.7
0.8
75.9
32.8
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
51.2
0.12
2
72.42
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045433
197155380 - 197182089
26710