About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19716156_19719181_R

Intron Information:

Intron Rank:
131944
Intron Class:
major
Intron Phase:
Intron Coordinates:
19716156 - 19719181
Intron Length:
3026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CATTCCTGTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.4
0.68
0.7
78.3
23.6
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
56.5
0.28
1.8
73.86
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018205
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039858
19715987 - 19781308
65322