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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197162758_197162854_F

Intron Information:

Intron Rank:
123419
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
197162758 - 197162854
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGGAAGTT
5'SS Class:
weak_major
3'SS Sequence:
CTTGTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
GTGTTCTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.4
0.01
1
53.3
38
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
81.1
0.7
0.8
75.9
32.8
Minor 5ss
31.1
-2.2
3.9
51.2
46.7
Minor BPS
51.2
0.12
2
72.42
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032935
197162566 - 197182089
19524