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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197162951_197181816_F

Intron Information:

Intron Rank:
123420
Intron Class:
major
Intron Phase:
Intron Coordinates:
197162951 - 197181816
Intron Length:
18866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045433
197155380 - 197182089
26710
ENSAPLT00000032935
197162566 - 197182089
19524