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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197163581_197175215_R

Intron Information:

Intron Rank:
140730
Intron Class:
major
Intron Phase:
Intron Coordinates:
197163581 - 197175215
Intron Length:
11635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAATC
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTAGAATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
72.5
37.2
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
36.3
-1.6
3.3
51.9
44.8
Minor BPS
55.8
0.18
1.9
70.79
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029992
197163485 - 197182237
18753