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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197188316_197240468_F

Intron Information:

Intron Rank:
150311
Intron Class:
major
Intron Phase:
Intron Coordinates:
197188316 - 197240468
Intron Length:
52153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTATGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TAAATCTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
71.1
40.4
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
69.9
0.45
1
65.2
40
Minor 5ss
32.6
-2
3.1
35.3
41.4
Minor BPS
62.8
0.48
1.5
76
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046833
197188060 - 197240625
52566