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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197224229_197225614_R

Intron Information:

Intron Rank:
143850
Intron Class:
major
Intron Phase:
Intron Coordinates:
197224229 - 197225614
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
TTAATATACACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.2
85.2
32.2
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
83.6
0.76
0.7
77.7
24.2
Minor 5ss
34
-1.8
3.3
49.7
46.6
Minor BPS
43.2
-0.4
2.2
66.22
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024699
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047092
197224077 - 197226969
2893