Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197303317_197305772_F

Intron Information:

Intron Rank:

147309

Intron Class:

major

Intron Phase:

Intron Coordinates:

197303317 - 197305772

Intron Length:

2456

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTTGTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAGAAA

U12 Branch Point Sequence:

TCTTCTTGTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

73.2

37.4

Major BPS

53.7

0.09

1.4

64.3

39.6

Major PPT

83.7

0.76

0.8

79.4

32.6

Minor 5ss

31.6

-2.1

2.9

39.6

39.8

Minor BPS

58.6

0.26

1.8

71.77

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029343

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017309

197302821 - 197305786

2966