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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197318789_197319856_F

Intron Information:

Intron Rank:
150009
Intron Class:
major
Intron Phase:
Intron Coordinates:
197318789 - 197319856
Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGACAA
5'SS Class:
major
3'SS Sequence:
TCCTCTCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCCTCTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
62.3
37.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
77.9
0.63
0.8
72.5
31.3
Minor 5ss
37.5
-1.4
3
44.2
44.6
Minor BPS
49
-0
2
69.19
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030671
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020063
197315537 - 197319957
4421