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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19733695_19756250_R

Intron Information:

Intron Rank:
147523
Intron Class:
major
Intron Phase:
Intron Coordinates:
19733695 - 19756250
Intron Length:
22556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATTATTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
80.2
30.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
42
-0.9
3
55.3
48.9
Minor BPS
58.1
0.25
1.8
73.18
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026728
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029836
19732592 - 19757205
24614