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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197451236_197457111_F

Intron Information:

Intron Rank:
126981
Intron Class:
major
Intron Phase:
Intron Coordinates:
197451236 - 197457111
Intron Length:
5876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTCT
5'SS Class:
major
3'SS Sequence:
TTTATATCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCACTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
67.6
37.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.8
0.76
0.8
77.5
35.7
Minor 5ss
45.5
-0.5
3.1
65.8
45.4
Minor BPS
53.2
0.1
2
72.28
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031241
197450926 - 197458431
7506