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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197470806_197473546_F

Intron Information:

Intron Rank:
131822
Intron Class:
major
Intron Phase:
Intron Coordinates:
197470806 - 197473546
Intron Length:
2741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTGAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTCTGAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
74.8
0.56
1.1
78.9
33.6
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
66.1
0.37
1.6
73.47
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020757
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048246
197470193 - 197479552
9360