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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197508669_197508772_R

Intron Information:

Intron Rank:
150931
Intron Class:
major
Intron Phase:
Intron Coordinates:
197508669 - 197508772
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATCTGA
5'SS Class:
major
3'SS Sequence:
TTTATGCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58.7
43
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.5
0.75
0.9
77.4
36.8
Minor 5ss
42.8
-0.8
2.8
47.7
47.7
Minor BPS
58.1
0.23
1.9
73.08
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028685
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036142
197508365 - 197509516
1152