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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197636423_197661132_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
197636423 - 197661132
Intron Length:
24710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTCCCAACT
Flanking Amino Acid:
QAECELLEDVRAFSQKRAAI
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
65.1
0.55
1.9
88.92
35.4

Associated Gene:

Gene:
FCHSD2
Ensembl Gene ID:
ENSAPLG00000014854
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046886
197636325 - 197767115
130791
ENSAPLT00000015495
197636367 - 197767115
130749