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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197661179_197701326_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197661179 - 197701326
Intron Length:
40148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTCGTTTTAACT
Flanking Amino Acid:
RAAIEKEYAQSIQKLASQYL
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.8
0.63
0.8
73.7
29.9
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
64.5
0.53
1.4
74.22
43.6

Associated Gene:

Gene:
FCHSD2
Ensembl Gene ID:
ENSAPLG00000014854
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046886
197636325 - 197767115
130791
ENSAPLT00000015495
197636367 - 197767115
130749