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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197733060_197734070_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197733060 - 197734070
Intron Length:
1011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGAACA
5'SS Class:
major
3'SS Sequence:
TCTCCGCATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTGTTTTCATCT
Flanking Amino Acid:
FQFQPSDSDTSFNAVQLVDI
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
67.7
37.2
Major BPS
100
1.24
0.5
100
0
Major PPT
67.2
0.39
0.9
58.7
37.4
Minor 5ss
36.7
-1.5
3
52
44.2
Minor BPS
49.3
0.03
1.8
68.15
43.1

Associated Gene:

Gene:
FCHSD2
Ensembl Gene ID:
ENSAPLG00000014854
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046886
197636325 - 197767115
130791