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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197756901_197761706_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197756901 - 197761706
Intron Length:
4806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGGTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
SVTNNGSSHLINADAEKEEG
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
72.4
39.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
41.7
-0.9
3.6
60.9
46
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
FCHSD2
Ensembl Gene ID:
ENSAPLG00000014854
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046886
197636325 - 197767115
130791
ENSAPLT00000015495
197636367 - 197767115
130749