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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197762673_197762804_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
197762673 - 197762804
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCATTT
5'SS Class:
weak_major
3'SS Sequence:
CGTTTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTTAT
U12 Branch Point Sequence:
TGTCGTTTATTT
Flanking Amino Acid:
EDGDMEDWVKARNKAGQVGY
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
74.2
37.1
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
82.3
0.73
0.9
73.4
41
Minor 5ss
69.3
0.65
2.3
82.5
37.1
Minor BPS
48.7
-0
2
69.71
41.8

Associated Gene:

Gene:
FCHSD2
Ensembl Gene ID:
ENSAPLG00000014854
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015495
197636367 - 197767115
130749
ENSAPLT00000046886
197636325 - 197767115
130791