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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197765311_197767031_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197765311 - 197767031
Intron Length:
1721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
CTGGCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACTGGCATT
Flanking Amino Acid:
PETSYGKLRPVRAAPPPPTQ
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.7
34.5
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
72.7
0.51
1
68.8
42
Minor 5ss
42.2
-0.9
3
62.5
42.2
Minor BPS
42.6
-0.5
2.4
68.96
42.6

Associated Gene:

Gene:
FCHSD2
Ensembl Gene ID:
ENSAPLG00000014854
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046886
197636325 - 197767115
130791
ENSAPLT00000015495
197636367 - 197767115
130749