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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197777833_197778734_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197777833 - 197778734
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTACTGACCA
Flanking Amino Acid:
RFGFPEGSVELYAEKVATRG
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
53
0.09
1.9
70.45
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014513
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015148
197776875 - 197781022
4148