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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197786070_197786531_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
197786070 - 197786531
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
TTTCAACTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTGATTTCAACT
Flanking Amino Acid:
TVGVPMMHRTGLYNYYDDET
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.1
64.1
43.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
68.7
0.42
1.1
65.2
40.2
Minor 5ss
43.8
-0.7
2.8
50.7
46
Minor BPS
53
0.17
1.6
67.98
43.3

Associated Gene:

Gene:
SERPINH1
Ensembl Gene ID:
ENSAPLG00000014348
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014960
197785351 - 197787387
2037