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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197936075_197942910_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
197936075 - 197942910
Intron Length:
6836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
ATTTACCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AGTCACTTAATC
Flanking Amino Acid:
EVRNDYNEINWFLYNRMGYW
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
69.4
36.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.3
0.73
0.8
78.5
35.1
Minor 5ss
34.4
-1.8
2.8
37.9
40.9
Minor BPS
63
0.39
1.5
68.61
36.2

Associated Gene:

Gene:
GDPD5
Ensembl Gene ID:
ENSAPLG00000011999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048102
197873401 - 197981134
107734
ENSAPLT00000030085
197873401 - 197981134
107734
ENSAPLT00000012531
197873401 - 197981134
107734