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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197943005_197943482_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197943005 - 197943482
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TGGTGTTTGACT
Flanking Amino Acid:
AGFTYITVLLILALCHIAVG
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
91.3
0.93
0.6
84.4
30.6
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
59.1
0.37
1.8
75.31
42

Associated Gene:

Gene:
GDPD5
Ensembl Gene ID:
ENSAPLG00000011999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048102
197873401 - 197981134
107734
ENSAPLT00000030085
197873401 - 197981134
107734
ENSAPLT00000012531
197873401 - 197981134
107734