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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197961082_197963846_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
197961082 - 197963846
Intron Length:
2765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CCACCTGTAACG
Flanking Amino Acid:
TYGVQADVVLSYDGVPFLMH
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.8
0.58
0.9
69.5
36
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
46.4
-0.4
2.1
48.91
45

Associated Gene:

Gene:
GDPD5
Ensembl Gene ID:
ENSAPLG00000011999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048102
197873401 - 197981134
107734
ENSAPLT00000030085
197873401 - 197981134
107734
ENSAPLT00000012531
197873401 - 197981134
107734