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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197971835_197974425_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
197971835 - 197974425
Intron Length:
2591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGGCATCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGCAT
U12 Branch Point Sequence:
CTCTGCTGCATT
Flanking Amino Acid:
IIIVGVFIFQNYHMIRWRLG
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
49
-0
1.5
60.7
45.9
Major PPT
68.4
0.41
1
60.9
39.9
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
44.6
-0.3
2.3
63.83
47

Associated Gene:

Gene:
GDPD5
Ensembl Gene ID:
ENSAPLG00000011999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030085
197873401 - 197981134
107734