Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197971835_197978335_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

197971835 - 197978335

Intron Length:

6501

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGATAAC

U12 Branch Point Sequence:

CCCCTGATAACC

Flanking Amino Acid:

IIIVGVFIFQKWRLGSIRTY

Intron Amino Acid Position:

519

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

35.3

Major BPS

62.7

0.32

1.2

39.8

Major PPT

89.3

0.88

0.6

84.5

23.3

Minor 5ss

37.8

-1.4

2.7

46.1

Minor BPS

41.5

-0.6

2.2

47.45

42.3

Associated Gene:

Gene:

GDPD5

Ensembl Gene ID:

ENSAPLG00000011999

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012531

197873401 - 197981134

107734