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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197978449_197979754_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
197978449 - 197979754
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGAATG
5'SS Class:
major
3'SS Sequence:
TTACCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTCTCCCTATTT
Flanking Amino Acid:
KIMKEKLIFSEINSGVETTD
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
68.1
42.8
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
74.3
0.55
0.8
66
35.6
Minor 5ss
42.7
-0.8
2.8
49.5
46.5
Minor BPS
59
0.36
2
80.43
41.9

Associated Gene:

Gene:
GDPD5
Ensembl Gene ID:
ENSAPLG00000011999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030085
197873401 - 197981134
107734
ENSAPLT00000012531
197873401 - 197981134
107734
ENSAPLT00000048102
197873401 - 197981134
107734