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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197990952_197991490_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197990952 - 197991490
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGCTG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GTTCCCACAGCT
Flanking Amino Acid:
AVDDTANTDKVQCYDPEENK
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
57
47.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
88.3
0.86
0.7
81.3
30.7
Minor 5ss
46
-0.4
3.2
64.4
47
Minor BPS
47.6
-0.1
2
72.42
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021295
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034991
197988587 - 197992913
4327