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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_197991680_197992478_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
197991680 - 197992478
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAACT
Flanking Amino Acid:
QEVATLPGPLESCGLTVCGG
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
85
0.79
0.8
76.7
37.5
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
74.9
0.86
1.5
88.97
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021295
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034991
197988587 - 197992913
4327