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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198014203_198014298_R

Intron Information:

Intron Rank:
136031
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
198014203 - 198014298
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTTTTCC
5'SS Class:
weak_major
3'SS Sequence:
CTTTCACACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TCTTCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.3
61.3
38.4
Major BPS
77.7
0.69
1
81
30.2
Major PPT
72
0.5
0.9
66
33.9
Minor 5ss
43
-0.8
2.4
54.7
42.4
Minor BPS
69.7
0.62
1.7
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020616
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043921
198011655 - 198015047
3393