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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198096244_198096958_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
198096244 - 198096958
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTACCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TCCTTTCTACCT
Flanking Amino Acid:
PFFRDYLMAGGLVSSDKESA
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.1
0.63
0.8
69.5
36.5
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
48.1
-0
1.9
67.08
44.4

Associated Gene:

Gene:
MOGAT2
Ensembl Gene ID:
ENSAPLG00000011246
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011719
198082957 - 198099287
16331