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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198119975_198121891_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
198119975 - 198121891
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTCTA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAAACTTAACT
Flanking Amino Acid:
WCPSASRFITGTGSNILSAL
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.6
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.9
0.94
0.5
89.3
19.5
Minor 5ss
43.4
-0.7
2.8
50
46.3
Minor BPS
73.5
0.82
1.5
87.33
37.3

Associated Gene:

Gene:
DGAT2
Ensembl Gene ID:
ENSAPLG00000011172
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011643
198119214 - 198134483
15270