Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198122835_198123679_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

198122835 - 198123679

Intron Length:

845

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTATCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GGCTTTTTATCT

Flanking Amino Acid:

LVFDWNTPKKGGRRSQWVRN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

80.3

34.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

89.6

0.89

0.7

82.1

34.6

Minor 5ss

34.4

-1.8

2.8

41.5

45.1

Minor BPS

55.9

0.26

1.6

68.52

42.7

Associated Gene:

Gene:

DGAT2

Ensembl Gene ID:

ENSAPLG00000011172

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022991

198116452 - 198135216

18765

ENSAPLT00000011643

198119214 - 198134483

15270