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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198133181_198133457_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
198133181 - 198133457
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAGGC
5'SS Class:
major
3'SS Sequence:
TCCATCCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GGGGTCCTAACA
Flanking Amino Acid:
KGFVKLALRHGADLVPVYSF
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.2
40.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
74.2
0.55
0.8
65.7
35.9
Minor 5ss
30.3
-2.3
3.3
33.5
42
Minor BPS
48.7
-0.1
1.8
57.13
42

Associated Gene:

Gene:
DGAT2
Ensembl Gene ID:
ENSAPLG00000011172
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011643
198119214 - 198134483
15270
ENSAPLT00000022991
198116452 - 198135216
18765