Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198154304_198167631_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

198154304 - 198167631

Intron Length:

13328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCGC

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCTTCTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

ACACCAAGAAAT

Flanking Amino Acid:

ALHVELPSQQRRLRHLRNIA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

67.8

43.5

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

77.5

0.62

0.7

76.4

25.6

Minor 5ss

31.1

-2.2

3.3

41.9

44.9

Minor BPS

40.3

-0.6

1.9

54.08

39.9

Associated Gene:

Gene:

UVRAG

Ensembl Gene ID:

ENSAPLG00000010570

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011092

198154217 - 198242549

88333