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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198178716_198191334_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
198178716 - 198191334
Intron Length:
12619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
TTCTCTTTACAG
Flanking Amino Acid:
RNSYDVFSLLRLHRAQCAIK
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
88.8
0.87
0.7
83.3
25.1
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
56.8
0.07
1.8
63.96
44.2

Associated Gene:

Gene:
UVRAG
Ensembl Gene ID:
ENSAPLG00000010570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025061
198170191 - 198242549
72359
ENSAPLT00000011092
198154217 - 198242549
88333
ENSAPLT00000030304
198170191 - 198242549
72359
ENSAPLT00000028895
198160045 - 198242549
82505