About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198191441_198193418_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
198191441 - 198193418
Intron Length:
1978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CAATTTTTACCT
Flanking Amino Acid:
LRCTSTSNELKKESECLQLK
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75.7
0.58
0.9
73.5
31.7
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
56.3
0.28
1.6
68.93
42.3

Associated Gene:

Gene:
UVRAG
Ensembl Gene ID:
ENSAPLG00000010570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030304
198170191 - 198242549
72359
ENSAPLT00000028895
198160045 - 198242549
82505
ENSAPLT00000025061
198170191 - 198242549
72359
ENSAPLT00000011092
198154217 - 198242549
88333