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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198193546_198195496_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
198193546 - 198195496
Intron Length:
1951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTTTCCTCATAT
Flanking Amino Acid:
HKEKNTLHDRENAFEAEYQK
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
78.1
0.63
0.8
73.7
30.3
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
56.9
0.29
1.9
78.87
42.6

Associated Gene:

Gene:
UVRAG
Ensembl Gene ID:
ENSAPLG00000010570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028895
198160045 - 198242549
82505
ENSAPLT00000025061
198170191 - 198242549
72359
ENSAPLT00000011092
198154217 - 198242549
88333
ENSAPLT00000030304
198170191 - 198242549
72359