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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198195582_198196011_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
198195582 - 198196011
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGGG
5'SS Class:
major
3'SS Sequence:
TTTTCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GTCCATGAAACT
Flanking Amino Acid:
YELRKECTAKRELFLKTNAQ
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
63.2
41.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
90.4
0.91
0.6
85.3
22
Minor 5ss
29.2
-2.4
3.4
38.5
46.6
Minor BPS
40.6
-0.6
2.3
58.56
44.5

Associated Gene:

Gene:
UVRAG
Ensembl Gene ID:
ENSAPLG00000010570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028895
198160045 - 198242549
82505
ENSAPLT00000025061
198170191 - 198242549
72359
ENSAPLT00000011092
198154217 - 198242549
88333
ENSAPLT00000030304
198170191 - 198242549
72359