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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198215061_198230486_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
198215061 - 198230486
Intron Length:
15426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTACA
5'SS Class:
major
3'SS Sequence:
CCTGTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GCCTTCCTAATT
Flanking Amino Acid:
VYLLNKNIAQLRYQHGLSTP
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
72.7
38.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
80.8
0.69
0.8
76.3
32.3
Minor 5ss
31
-2.2
2.7
35.2
40.7
Minor BPS
55.5
0.25
1.7
68.49
42.9

Associated Gene:

Gene:
UVRAG
Ensembl Gene ID:
ENSAPLG00000010570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028895
198160045 - 198242549
82505
ENSAPLT00000025061
198170191 - 198242549
72359
ENSAPLT00000011092
198154217 - 198242549
88333
ENSAPLT00000030304
198170191 - 198242549
72359