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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198230579_198241080_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
198230579 - 198241080
Intron Length:
10502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TCTGATTTATCC
Flanking Amino Acid:
NFMELGLMVRCDRHHTSSAI
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
81.4
0.71
0.7
76.6
25.4
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
49.3
-0
1.9
62.52
43.4

Associated Gene:

Gene:
UVRAG
Ensembl Gene ID:
ENSAPLG00000010570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028895
198160045 - 198242549
82505
ENSAPLT00000025061
198170191 - 198242549
72359
ENSAPLT00000011092
198154217 - 198242549
88333
ENSAPLT00000030304
198170191 - 198242549
72359