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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198368667_198369324_F

Intron Information:

Intron Rank:
123350
Intron Class:
major
Intron Phase:
Intron Coordinates:
198368667 - 198369324
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
AATGGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
82
0.72
0.7
73
31.9
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
46
-0.2
2
62.67
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016505
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037393
198368023 - 198369363
1341