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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198375101_198385115_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
198375101 - 198385115
Intron Length:
10015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
AACTTCTCACCA
Flanking Amino Acid:
EKVGSHGTQDRQCNKTSNGS
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
82
31
Major BPS
85
0.87
0.8
85.6
23
Major PPT
87.6
0.85
0.7
80.2
31.8
Minor 5ss
29.7
-2.3
3.7
45.9
49.3
Minor BPS
48.7
-0.1
1.8
58.63
41.1

Associated Gene:

Gene:
WNT11
Ensembl Gene ID:
ENSAPLG00000010439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038014
198374926 - 198398800
23875
ENSAPLT00000010878
198374926 - 198398800
23875