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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198385409_198386907_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
198385409 - 198386907
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CATTTCCTAACT
Flanking Amino Acid:
HLHNSEVGRQVLKASLEMKC
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.1
80.7
33.7
Major BPS
72
0.55
1
71.8
31.4
Major PPT
91.1
0.92
0.6
87.3
23.2
Minor 5ss
40.7
-1
3
57.6
46.6
Minor BPS
66.5
0.6
1.7
81.54
39.8

Associated Gene:

Gene:
WNT11
Ensembl Gene ID:
ENSAPLG00000010439
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038014
198374926 - 198398800
23875
ENSAPLT00000010878
198374926 - 198398800
23875