Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198449938_198451804_R

Intron Information:

Intron Rank:

130829

Intron Class:

major

Intron Phase:

Intron Coordinates:

198449938 - 198451804

Intron Length:

1867

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCTATT

5'SS Class:

major

3'SS Sequence:

CCTTTTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

TTTATGATACTG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.62

1.2

81.8

38.5

Major BPS

84.6

0.86

41.2

Major PPT

89.8

0.89

0.6

Minor 5ss

45.8

-0.4

68.3

42.6

Minor BPS

-0.9

2.4

52.06

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017627

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040273

198448600 - 198452361

3762