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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198455756_198469168_R

Intron Information:

Intron Rank:
142047
Intron Class:
major
Intron Phase:
Intron Coordinates:
198455756 - 198469168
Intron Length:
13413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TAGAACTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.7
44.5
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
40.7
-1
2.9
49.5
46.5
Minor BPS
44.7
-0.3
1.8
60.12
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032845
198452474 - 198470844
18371